AGMP
The African Genomic Medicine Portal (AGMP) provides researchers with a platform from which they can retrieve existing information on genetic associations with disease and drug response in African populations.
Website | Documentation
Tags: Pharmacogenetics, Variant Annotation, Gene Annotation, Clinical Genetics
AGVD
The African Genomic Variation Database The African Genome Variation Database (AGVD) is an online platform for exploring genomic variation data within African populations. The AGVD frequencies reported are calculated from a joint-called high coverage whole genome sequence dataset.
Website | Documentation
Tags: Genetic Variation, Variant Annotation, Variant Interpretation, Variant Frequency
AfPO
AfPO is an ontology that brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to annotate data about African study participants in research studies, such as their language or ethnicity.
Website | Documentation
Tags: Data Standardisation, Population Descriptors, Population Genetics
Data Catalogue
The Data Catalogue serves as a one-stop resource for finding African research datasets relevant to biomedical research. The Catalogue spans a range of data domains, including Omics data, Health data, and more. The interface provides users with a broad overview of these datasets using specific metadata fields at the project and dataset levels.
Website | Documentation
Tags: Data Discovery, Metadata, FAIR
Data Collection Toolkits
A suite of easy-to-use data collection toolkits that cover a range of data types. These toolkits facilitate phenotype standardisation and harmonisation efforts in Africa and beyond. The standards can form the basis for data models for data harmonisation and also promote FAIR data principles, ultimately enabling data integration and interoperability.
Website | Documentation
Tags: Data Standardisation, Phenotype Harmonisation, Data Collection
H3Africa Data & Biospecimen Catalogue
The H3Africa Catalogue enables researchers to browse the available biospecimens and datasets from H3Africa studies, along with their descriptions, and to request access to them. The information contained in the H3Africa catalogue is derived from the H3Africa archive, which is now hosted by AfriGen-D, and three H3Africa biorepositories.
Website | Documentation
Tags: H3Africa, African genomics, data request, sample request